Alexandre Ferreira Ramos

Prof. Dr. Alexandre Ferreira Ramos

Artigos completos publicados em periódicos

MASUDA, LAURO HIROSHI PIMENTEL ; SABINO, ALAN UTSUNI ; REINITZ, JOHN ; RAMOS, ALEXANDRE FERREIRA ; MACHADO-LIMA, ARIANE ; ANDRIOLI, LUIZ PAULO . Global repression by tailless during segmentation. DEVELOPMENTAL BIOLOGY, v. 505, p. 11-23, 2024.

SALIM DE CASTRO, GABRIELA ; GAMA, LEONARDO R. ; RAMOS, ALEXANDRE FERREIRA ; SILVA, G. G. ; TEIXEIRA, A. A. ; CUNHA-NETO, E. ; SOUZA, H. P. ; MARIE, S. K. ; TALIB, L. L. ; COELHO, V. ; ARAUJO, A. L. ; RITTO, A. P. ; BELON, A. R. ; SANTOS, A. S. ; BARRERE, A. P. ; SAWAMURA, M. V. ; LAMAS, C. A. ; BALDI, B. G. ; CARVALHO, C. R. ; KULIWOSKI, L. D. . Post-COVID-19 condition: systemic inflammation and low functional exercise capacity. FRONTIERS IN NUTRITION, v. 11, p. 1295026, 2024.

MURILLO CARRASCO, ALEXIS GERMÁN ; GIOVANINI, GUILHERME ; RAMOS, ALEXANDRE FERREIRA ; CHAMMAS, ROGER ; BUSTOS, SILVINA ODETE . Insights from a Computational-Based Approach for Analyzing Autophagy Genes across Human Cancers. Genes, v. 14, p. 1550, 2023. Citações:

1 |

SABINO, A. U. ; SAFATLE-RIBEIRO, A. ; LIMA, S. S. ; MARQUES, C. F. S. ; MALUF-FILHO, F. ; F. RAMOS, ALEXANDRE . In vivo endomicroscopy enables machine learning-based prediction of responsiveness to neoadjuvant chemoradiotherapy by advanced rectal cancer patients. CRITICAL REVIEWS IN ONCOGENESIS, v. 29, p. 53-63, 2023.

GIOVANINI, GUILHERME ; R. C. BARROS, LUCIANA ; GAMA, LEONARDO R. ; TORTELLI JR., T. C. ; RAMOS, ALEXANDRE F . A Stochastic Binary Model for the Regulation of Gene Expression to Investigate Responses to Gene Therapy. Cancers, v. 14, p. 633, 2022. Citações:

3 |

ZHANG, KUN ; RAMOS, ALEXANDRE FERREIRA ; WANG, ERKANG ; WANG, JIN . The rate of thermodynamic cost against adiabatic and nonadiabatic fluctuations of a single gene circuit in embryos. Journal Of Chemical Physics, v. 156, p. 225101, 2022.

HUANG, XIAOLONG ; F. RAMOS, ALEXANDRE ; DENG, YUEFAN . Optimal circulant graphs as low-latency network topologies. JOURNAL OF SUPERCOMPUTING, v. 78, p. 13491-13510, 2022. Citações:

12 |

YESILKANAL, ALI EKREM ; YANG, DONGBO ; VALDESPINO, ANDREA ; TIWARI, PAYAL ; SABINO, ALAN U ; NGUYEN, LONG CHI ; LEE, JIYOUNG ; XIE, XIAO-HE ; SUN, SIQI ; DANN, CHRISTOPHER ; ROBINSON-MAILMAN, LYDIA ; STEINBERG, ETHAN ; STUHLMILLER, TIMOTHY ; FRANKENBERGER, CASEY ; GOLDSMITH, ELIZABETH ; JOHNSON, GARY L ; RAMOS, ALEXANDRE F ; ROSNER, MARSHA R . Limited inhibition of multiple nodes in a driver network blocks metastasis. eLife, v. 10, p. e59696, 2021. Citações:

17 |

YESILKANAL, ALI E. ; JOHNSON, GARY L. ; Ramos, Alexandre F. ; ROSNER, MARSHA RICH . New strategies for targeting kinase networks in cancer. JOURNAL OF BIOLOGICAL CHEMISTRY, v. 297, p. 101128, 2021. Citações:

14 |

10.

DENG, YUEFAN ; GUO, MENG ; Ramos, Alexandre F. ; HUANG, XIAOLONG ; XU, ZHIPENG ; LIU, WEIFENG . Optimal low-latency network topologies for cluster performance enhancement. JOURNAL OF SUPERCOMPUTING, v. 76, p. 9558-9584, 2020. Citações:

9 |

11.

GAMA, LEONARDO R. ; GIOVANINI, G. ; BALAZSI, G. ; RAMOS, ALEXANDRE FERREIRA . Binary expression enhances reliability of messaging in gene networks. Entropy, v. 22, p. 479, 2020. Citações:

2 |

12.

GIOVANINI, GUILHERME ; U. SABINO, ALAN ; R. C. BARROS, LUCIANA ; F. RAMOS, ALEXANDRE . A comparative analysis of noise properties of stochastic binary models for a self-repressing and for an externally regulating gene. MATHEMATICAL BIOSCIENCES AND ENGINEERING (ONLINE), v. 17, p. 5477-5503, 2020. Citações:

5 |

13.

SALIM DE CASTRO, GABRIELA ; CORREIA-LIMA, JOANNA ; SIMOES, ESTEFANIA ; ORSSO, CAMILA E. ; XIAO, JINGJIE ; GAMA, LEONARDO R. ; GOMES, SILVIO PIRES ; GONÇALVES, DANIELA CAETANO ; FIGUERÊDO COSTA, RAQUEL GALVÃO ; RADLOFF, KATRIN ; LENZ, ULRIKE ; TARANKO, ANNA E. ; BIN, FANG CHIA ; FORMIGA, FERNANDA B. ; DE GODOY, LOUISIE G.L. ; DE SOUZA, RAFAEL P. ; NUCCI, LUIS H.A. ; FEITOZA, MARIO ; CAMPI DE CASTRO, CLAUDIO ; RAMOS, A. F. . Myokines in treatment-naïve patients with cancer-associated cachexia. CLINICAL NUTRITION, v. 40, p. 2443-2455, 2020. Citações:

21 |

14.

RAMOS, ALEXANDRE FERREIRA; REINITZ, J. . Physical implications of so(2,1) symmetry in exact solutions for a self-repressing gene. JOURNAL OF CHEMICAL PHYSICS, v. 151, p. 041101, 2019. Citações:

4 |

15.

SABINO, A. U. ; VASCONCELOS, M. ; Y. Deng ; RAMOS, ALEXANDRE FERREIRA . Symmetry-guided design of topologies for supercomputer networks. INTERNATIONAL JOURNAL OF MODERN PHYSICS C, v. 29, p. 1850048, 2018. Citações:

3 |

16.

OTAKE, ANDREIA HANADA ; DE FREITAS SAITO, RENATA ; DUARTE, ANA PAULA MARQUES ; RAMOS, ALEXANDRE FERREIRA ; CHAMMAS, ROGER . G D3 ganglioside-enriched extracellular vesicles stimulate melanocyte migration. BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR AND CELL BIOLOGY OF LIPIDS, p. 422-432, 2018. Citações:

13 |

17.

SABINO, A. U. ; VASCONCELOS, M. F. S. ; SITTONI, M. Y. ; LAUTENSCHLAGER, W ; QUEIROGA, A. S. ; MORAIS, M. C. C. ; RAMOS, A. F. . Lessons and perspectives for applications of stochastic models in biological and cancer research. Clinics, v. 73, p. e536s, 2018. Citações:

1 |

18.

TANAKA, L. ; ARAUJO, T. ; RODRIGUEZ, A. ; FERRAZ, M. ; PELEGATI, V. ; MORAIS, M. C. C. ; SANTOS, A. ; CESAR, C. ; RAMOS, A. F. ; ALENCAR, A. ; LAURINDO, F. . Peri/epicellular Protein Disulfide Isomerase-A1 Acts as an Upstream Organizer of Cytoskeletal Mechanoadaptation in Vascular Smooth Muscle Cells. AMERICAN JOURNAL OF PHYSIOLOGY-HEART AND CIRCULATORY PHYSIOLOGY, v. 316, p. H566-H579, 2018. Citações:

15 |

19.

SHAMAROVA, E. ; Chertovskih, R ; RAMOS, A. F. ; AGUIAR, P. . Backward-stochastic-differential-equation approach to modeling of gene expression. PHYSICAL REVIEW E, v. 95, p. 032418, 2017. Citações:

5 |

20.

MORAIS, M. C. C. ; STUHL, I. ; SABINO, A. U. ; LAUTENSCHLAGER, W ; QUEIROGA, A. S. ; TORTELLI JR., T. C. ; CHAMMAS, R. ; SUHOV, Y. ; RAMOS, A. F. . Stochastic model of contact inhibition and the proliferation of melanoma in situ. Scientific Reports, v. 7, p. 8026, 2017. Citações:

10 |

21.

BARR, K. A. ; MARTINEZ, C. ; MORAN, J. R. ; KIM, AH-RAM ; RAMOS, A. F. ; REINITZ, J. . Synthetic enhancer design by in silico compensatory evolution reveals flexibility and constraint in cis-regulation. BMC Systems Biology, v. 11, p. 116, 2017. Citações:

10 |

22.

PRATA, G. N. ; ; RAMOS, A. F. . Stochastic model for gene transcription on Drosophila melanogaster embryos. PHYSICAL REVIEW E, v. 93, p. 022403, 2016. Citações:

7 |

23.

; RAMOS, ALEXANDRE FERREIRA ; HORNOS, JOSÉ EDUARDO MARTINHO . Comment on ¿Steady-state fluctuations of a genetic feedback loop: An exact solution¿ [J. Chem. Phys. 137, 035104 (2012)]. The Journal of Chemical Physics, v. 142, p. 027101, 2015. Citações:

6 |

24.

Ramos, Alexandre F.; HORNOS, JOSÉ EDUARDO MARTINHO ; REINITZ, J. . Gene regulation and noise reduction by coupling of stochastic processes. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics (Print), v. 91, p. 020701(R), 2015. Citações:

10 |

25.

KIM, AH-RAM ; MARTINEZ, CARLOS ; IONIDES, JOHN ; Ramos, Alexandre F. ; LUDWIG, MICHAEL Z. ; OGAWA, NOBUO ; SHARP, DAVID H. ; REINITZ, JOHN . Rearrangements of 2.5 Kilobases of Noncoding DNA from the Drosophila even-skipped Locus Define Predictive Rules of Genomic cis-Regulatory Logic. PLOS Genetics (Online), v. 9, p. e1003243, 2013. Citações:

48 |

26.

; ; RAMOS, ALEXANDRE FERREIRA ; RADULESCU, OVIDIU ; HORNOS, JOSÉ EDUARDO MARTINHO . Multimodality and Flexibility of Stochastic Gene Expression. Bulletin of Mathematical Biology (Print), v. 75, p. 2600-2630, 2013. Citações:

17 |

27.

Y. Deng ; RAMOS, A. F. ; . SYMMETRY INSIGHTS FOR DESIGN OF SUPERCOMPUTER NETWORK TOPOLOGIES: ROOTS AND WEIGHTS LATTICES. International Journal of Modern Physics B, v. 26, p. 125169-1, 2012. Citações:

6 |

28.

RAMOS, A. F.; ; . Exact time-dependent solutions for a self-regulating gene. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics (Print), v. 83, p. 062902, 2011. Citações:

34 |

29.

RAMOS, A. F.; ; ; . Symmetries in biology: from genetic code to stochastic gene regulation. IET Systems Biology, v. 4, p. 311-329, 2010. Citações:

21 |

30.

RAMOS, A. F.; HORNOS, J. E. M. . Symmetry and stochastic gene regulation. Physical Review Letters (Print), v. 99, p. 108103, 2007. Citações:16 |16