2022
106. ISHIDA, JULIANE K. ; BINI, ANDRESSA P. ; CRESTE, SILVANA ; Van Sluys, Marie-Anne . Towards defining the core Saccharum microbiome: input from five genotypes. BMC MICROBIOLOGY, v. 22, p. 193, 2022.
2021
105. SOUSA’BAENA, MARIANE S ; HERNANDES-LOPES, JOSÉ ; Van Sluys, Marie-Anne . Reaching the top through a tortuous path: helical growth in climbing plants. CURRENT OPINION IN PLANT BIOLOGY, v. 59, p. 101982, 2021.
104. PARTIDA, VANIA GABRIELA SEDANO ; DIAS, HENRIQUE MOURA ; CORCINO, DIANA SUSANA MARTINEZ ; Van Sluys, Marie-Anne . Sucrose-phosphate phosphatase from sugarcane reveals an ancestral tandem duplication. BMC PLANT BIOLOGY, v. 21, p. 23, 2021.
2020
103. MASUDA, HANA PAULA ; NAKABASHI, MYNA ; MORGANTE, PATRICIA G ; KAJIHARA, DANIELA ; DE SETTA, NATHALIA ; MENCK, Carlos Frederico Martins ; Van Sluys, Marie-Anne . Evidence for sub-functionalization of tandemly duplicated XPB nucleotide excision repair genes in Arabidopsis thaliana. GENE, v. 754, p. 144818, 2020.
2019
102. Sforça, Danilo Augusto ; VAUTRIN, SONIA ; CARDOSO-SILVA, CLAUDIO BENICIO ; MANCINI, MELINA CRISTINA ; ROMERO-DA CRUZ, MARÍA VICTORIA ; PEREIRA, GUILHERME DA SILVA ; CONTE, MÔNICA ; BELLEC, ARNAUD ; DAHMER, NAIR ; FOURMENT, JOELLE ; RODDE, NATHALIE ; SLUYS MAV. ; VICENTINI, RENATO ; GARCIA, ANTÔNIO AUGUSTO FRANCO ; FORNI-MARTINS, ELIANA REGINA ; CARNEIRO, MONALISA SAMPAIO ; HOFFMANN, HERMANN PAULO ; PINTO, Luciana Rossini ; LANDELL, MARCOS GUIMARÃES DE ANDRADE ; VINCENTZ, MICHEL ; BERGES, HELENE ; SOUZA, A. P. . Gene Duplication in the Sugarcane Genome: A Case Study of Allele Interactions and Evolutionary Patterns in Two Genic Regions. Frontiers in Plant Science, v. 10, p. 1-15, 2019.
101. BARROS-CARVALHO, GESIELE ALMEIDA ; HUNGRIA, MARIANGELA ; LOPES, FABRÍCIO MARTINS ; VAN SLUYS, MARIE-ANNE . Brazilian-adapted soybean Bradyrhizobium strains uncover IS elements with potential impact on biological nitrogen fixation. FEMS Microbiology Letters, v. 366, p. fnz046, 2019.
100. TAVARES, EVELINE Q P ; DE SOUZA, AMANDA P ; ROMIM, GRAYCE H ; GRANDIS, ADRIANA ; PLASENCIA, ANNA ; GAIARSA, JONAS W ; GRIMA-PETTENATI, JACQUELINE ; DE SETTA, NATHALIA ; Van Sluys, Marie-Anne ; BUCKERIDGE, MARCOS S . The control of endopolygalacturonase expression by the sugarcane RAV transcription factor during aerenchyma formation. JOURNAL OF EXPERIMENTAL BOTANY, v. 70, p. 497-506, 2019.
99. SOUZA, GLAUCIA MENDES VAN SLUYS, MARIE-ANNE LEMBKE, CAROLINA GIMILIANI LEE, HAYAN MARGARIDO, GABRIEL RODRIGUES ALVES HOTTA, CARLOS TAKESHI GAIARSA, JONAS WEISSMANN DINIZ, AUGUSTO LIMA OLIVEIRA, MAURO DE MEDEIROS FERREIRA, SÁVIO DE SIQUEIRA NISHIYAMA, MILTON YUTAKA TEN-CATEN, FELIPE RAGAGNIN, GEOVANI TOLFO ANDRADE, PABLO DE MORAIS DE SOUZA, ROBSON FRANCISCO NICASTRO, GIANLUCCA GONÇALVES PANDYA, RAVI KIM, CHANGSOO GUO, HUI DURHAM, ALAN MITCHELL CARNEIRO, MONALISA SAMPAIO ZHANG, JISEN ZHANG, XINGTAN ZHANG, QING MING, RAY , et al. ; Assembly of the 373k gene space of the polyploid sugarcane genome reveals reservoirs of functional diversity in the world’s leading biomass crop. GigaScience, v. 8, p. 1, 2019.
98. RODY, HUGO V. S. ; BOMBARDELLI, RENATO G. H. ; CRESTE, SILVANA ; CAMARGO, LUÍS E. A. ; Van Sluys, Marie-Anne ; MONTEIRO-VITORELLO, CLAUDIA B. . Genome survey of resistance gene analogs in sugarcane: genomic features and differential expression of the innate immune system from a smut-resistant genotype. BMC GENOMICS, v. 20, p. 809, 2019.
97. DA COSTA, ZIRLANE PORTUGAL ; CAUZ-SANTOS, LUIZ AUGUSTO ; RAGAGNIN, GEOVANI TOLFO ; Van Sluys, Marie-Anne ; DORNELAS, MARCELO CARNIER ; BERGES, HÉLÈNE ; DE MELLO VARANI, ALESSANDRO ; Vieira, Maria Lucia Carneiro . Transposable element discovery and characterization of LTR-retrotransposon evolutionary lineages in the tropical fruit species Passiflora edulis. MOLECULAR BIOLOGY REPORTS, v. 46, p. 6117, 2019.
96. HERNANDES’LOPES, JOSÉ ; SOUSA’BAENA, MARIANE S. ; LEMOS, RENATA C. C. ; CORRÊA, TATIANA C. S. ; VAN SLUYS, MARIE’ANNE ; MELO’DE’PINNA, GLADYS FLAVIA DE ALBUQUERQUE . Toward understanding inflorescence development and architecture in Passiflora : insights from comparative anatomy and expression of APETALA1. AMERICAN JOURNAL OF BOTANY, v. 106, p. 1173, 2019.
2018
95. Garsmeur, Olivier DROC, GAETAN ANTONISE, RUDIE GRIMWOOD, JANE POTIER, BERNARD AITKEN, KAREN JENKINS, JERRY MARTIN, GUILLAUME Charron, Carine HERVOUET, CATHERINE COSTET, LAURENT YAHIAOUI, NABILA HEALEY, ADAM SIMS, DAVID CHERUKURI, YESESRI SREEDASYAM, AVINASH KILIAN, ANDRZEJ CHAN, AGNES Van Sluys, Marie-Anne SWAMINATHAN, KANKSHITA TOWN, CHRISTOPHER BERGÈS, HÉLÈNE SIMMONS, BLAKE GLASZMANN, JEAN CHRISTOPHE VAN DER VOSSEN, EDWIN , et al. ; A mosaic monoploid reference sequence for the highly complex genome of sugarcane. Nature Communications, v. 9, p. 2638, 2018.
94. ZHANG, JISEN ZHANG, XINGTAN Tang, Haibao ZHANG, QING HUA, XIUTING MA, XIAOKAI ZHU, FAN JONES, TYLER ZHU, XINGUANG Bowers, John WAI, CHING MAN ZHENG, CHUNFANG SHI, YAN CHEN, SHUAI XU, XIUMING YUE, JINGJING NELSON, DAVID R. HUANG, LIXIAN LI, ZHEN XU, HUIMIN ZHOU, DONG WANG, YONGJUN HU, WEICHANG LIN, JISHAN DENG, YOUJIN , et al. ; Allele-defined genome of the autopolyploid sugarcane Saccharum spontaneum L.. NATURE GENETICS, v. 50, p. 1754, 2018.
93. LEWIN, HARRIS A. ; ROBINSON, GENE E. ; KRESS, W. JOHN ; BAKER, WILLIAM J. ; CODDINGTON, JONATHAN ; CRANDALL, KEITH A. ; DURBIN, RICHARD ; EDWARDS, SCOTT V. ; FOREST, FÉLIX ; GILBERT, M. THOMAS P. ; GOLDSTEIN, MELISSA M. ; GRIGORIEV, IGOR V. ; HACKETT, KEVIN J. ; HAUSSLER, DAVID ; JARVIS, ERICH D. ; JOHNSON, WARREN E. ; PATRINOS, ARISTIDES ; RICHARDS, STEPHEN ; CASTILLA-RUBIO, JUAN CARLOS ; Van Sluys, Marie-Anne ; SOLTIS, PAMELA S. ; XU, XUN ; YANG, HUANMING ; ZHANG, GUOJIE . Earth BioGenome Project: Sequencing life for the future of life. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, v. 115, p. 4325-4333, 2018.
2017
92. NAGEL, RAIMUND ; TURRINI, PAULA C. G. ; NETT, RYAN S. ; Leach, Jan E. ; VERDIER, VALÉRIE ; Van Sluys, Marie-Anne ; PETERS, REUBEN J. . An operon for production of bioactive gibberellin A 4 phytohormone with wide distribution in the bacterial rice leaf streak pathogen Xanthomonas oryzae pv. oryzicola. NEW PHYTOLOGIST, v. 214, p. 1-7, 2017.
91. BARROS-CARVALHO, GESIELE ALMEIDA ; Van Sluys, Marie-Anne ; LOPES, FABRICIO MARTINS . An Efficient Approach to Explore and Discriminate Anomalous Regions in Bacterial Genomes Based on Maximum Entropy. JOURNAL OF COMPUTATIONAL BIOLOGY, 2017.
90. MILLER, ROBERT NEIL GERARD ; COSTA ALVES, GABRIEL SERGIO ; Van Sluys, Marie-Anne . Plant immunity: unravelling the complexity of plant responses to biotic stresses. ANNALS OF BOTANY, v. 119, p. 681-687, 2017.
89. VILELA, MARIANE DE MENDONÇA ; DEL-BEM, LUIZ-EDUARDO ; Van Sluys, Marie-Anne ; DE SETTA, NATHALIA ; KITAJIMA, JOÃO PAULO ; CRUZ, GUILHERME MARCELO QUEIROGA ; SFORÇA, DANILO AUGUSTO ; DE SOUZA, ANETE PEREIRA ; FERREIRA, PAULO CAVALCANTI GOMES ; GRATIVOL, CLÍCIA ; CARDOSO-SILVA, CLAUDIO BENICIO ; Vicentini, Renato ; VINCENTZ, Michel . Analysis of three sugarcane homo/homeologous regions suggests independent polyploidization events of Saccharum officinarum and Saccharum spontaneum. Genome Biology and Evolution, v. 9, p. evw293-278, 2017.
88. FIRETTI, FABIANA ; ZUNTINI, ALEXANDRE RIZZO ; GAIARSA, JONAS WEISMANN ; OLIVEIRA, RENATA SOUZA ; LOHMANN, LÚCIA G. ; Van Sluys, Marie-Anne . Complete chloroplast genome sequences contribute to plant species delimitation: A case study of the Anemopaegma species complex. AMERICAN JOURNAL OF BOTANY, v. 104, p. 1493-1509, 2017.
2016
87. OCHOA CRUZ, EDGAR ANDRES ; CRUZ, GUILHERME MARCELLO QUEIROGA ; VIEIRA, ANDRÉIA PRATA ; Van Sluys, Marie-Anne . Virus-like attachment sites as structural landmarks of plants retrotransposons. Mobile DNA, v. 7, p. 14, 2016.
86. MEDEIROS, AMANDA L. ; FURTADO, CRISTIANE M. ; LEITE, FRANCINALDO S. ; SOUTO, VALESKA S. ; DE SETTA, NATHALIA ; Van Sluys, Marie-Anne ; KITAJIMA, JOÃO PAULO ; COSTA, ANA PAULA P. ; BENEDITO, VAGNER A. ; SCORTECCI, KATIA C. . Molecular Genetic Dissection of Sugarcane Flowering under Equatorial Field Conditions. Tropical Plant Biology, v. 9, p. 252-266, 2016.
85. MIES, MIGUEL ; Van Sluys, M. A. ; METCALFE, C. J. ; SUMIDA, P. Y. G. . Molecular evidence of symbiotic activity between Symbiodinium and Tridacna maxima larvae. Symbiosis, v. 70, p. 1-10, 2016.
84. SCHAKER, PATRICIA D. C. ; PALHARES, A. C. ; TANIGUTI, LUCAS M. ; PETERS, LEILA P. ; CRESTE, SILVANA ; AITKEN, KAREN S. ; SLUYS MAV. ; KITAJIMA, JOÃO P. ; VIEIRA, MARIA L. C. ; MONTEIRO-VITORELLO, CLAUDIA B. . RNAseq Transcriptional Profiling following Whip Development in Sugarcane Smut Disease. Plos One, v. 11, p. e0162237, 2016.
2015
83. METCALFE, CUSHLA J. ; OLIVEIRA, SARAH G. ; GAIARSA, JONAS W. ; AITKEN, KAREN S. ; CARNEIRO, MONALISA S. ; ZATTI, FERNANDA ; Van Sluys, Marie-Anne . Using quantitative PCR with retrotransposon-based insertion polymorphisms as markers in sugarcane. Journal of Experimental Botany, v. 66, p. 4239-4250, 2015.
82. SOUZA, GLAUCIA MENDES VICTORIA, R. L. VERDADE, L. M. JOLY, C. A. NETTO, P. E. A. CRUZ, C. H. B. CANTARELLA, H. CHUM, H. CORTEZ, L. A. B. DIAZ-CHAVEZ, R. FERNANDES, E. FINCHER, G. FINCHER, G. B. GOLDEMBERG, J. NOGUEIRA, L. A. H. HUNTLEY, B. J. JOHNSON, F. X. KAFFKA, S. KARP, A. LEAL, M. R. L. V. LONG, S. P. LYNDT, L. R. MACEDO, I. C. MACIEL FILHO, R. NASSAR, A. M. , et al. ; SCOPE Bioenergy and Sustainability Technical Summary. Bioenergy and Sustainability bridging the gaps, v. 72, p. 1-779, 2015.
2014
81. Cruz, Guilherme M. Q. ; METCALFE, CUSHLA J. ; de Setta, Nathalia ; CRUZ, EDGAR A. O. ; VIEIRA, ANDRÉIA PRATA ; MEDINA, ROSARIO ; Van Sluys, Marie-Anne . Virus-Like Attachment Sites and Plastic CpG Islands: Landmarks of Diversity in Plant Del Retrotransposons. Plos One, v. 9, p. e97099, 2014.
80. de Setta, Nathalia MONTEIRO-VITORELLO, CLÁUDIA BARROS METCALFE, CUSHLA JANE CRUZ, GUILHERME MARCELO DEL BEM, LUIZ EDUARDO Vicentini, Renato NOGUEIRA, FÁBIO TEBALDI CAMPOS, ROBERTA ALVARES NUNES, SIDENY LIMA TURRINI, PAULA CRISTINA VIEIRA, ANDREIA PRATA OCHOA CRUZ, EDGAR ANDRÉS CORRÊA, TATIANA CAROLINE HOTTA, CARLOS TAKESHI de Mello Varani, Alessandro VAUTRIN, SONIA DA TRINDADE, ADILSON SILVA DE MENDONÇA VILELA, MARIANE LEMBKE, CAROLINA GIMILIANI SATO, PALOMA MIEKO DE ANDRADE, RODRIGO FANDINO NISHIYAMA, MILTON YUTAKA CARDOSO-SILVA, CLAUDIO BENICIO SCORTECCI, KATIA CASTANHO GARCIA, ANTÔNIO AUGUSTO , et al. ; Building the sugarcane genome for biotechnology and identifying evolutionary trends. BMC GENOMICS, v. 15, p. 540, 2014.
2013
79. VARANI, A. M. ; MONTEIRO-VITORELLO, C. B. ; NAKAYA, H. I. ; VANSLUYS MA . The Role of Prophage in Plant Pathogenic Bacteria. Annual Review of Phytopathology (Print), v. 51, p. 429, 2013.
78. DARRASSE, ARMELLE CARRÈRE, SÉBASTIEN BARBE, VALÉRIE BOUREAU, TRISTAN ARRIETA-ORTIZ, MARIO L BONNEAU, SOPHIE BRIAND, MARTIAL BRIN, CHRYSTELLE COCIANCICH, STÉPHANE DURAND, KARINE FOUTEAU, STÉPHANIE GAGNEVIN, LIONEL GUÉRIN, FABIEN GUY, ENDRICK INDIANA, ARNAUD Koebnik, Ralf LAUBER, EMMANUELLE MUNOZ, ALEJANDRA NOËL, LAURENT D PIERETTI, ISABELLE POUSSIER, STÉPHANE PRUVOST, OLIVIER ROBÈNE-SOUSTRADE, ISABELLE ROTT, PHILIPPE ROYER, MONIQUE , et al. ; Genome sequence of Xanthomonas fuscans subsp. fuscans strain 4834-R reveals that flagellar motility is not a general feature of xanthomonads. BMC Genomics, v. 14, p. 761, 2013.
77. GARCIA, ANTONIO A. F. Mollinari, Marcelo Marconi, Thiago G. SERANG, OLIVER R. SILVA, RENATO R. VIEIRA, MARIA L. C. Vicentini, Renato COSTA, ESTELA A. MANCINI, MELINA C. GARCIA, MELISSA O. S. PASTINA, MARIA M. Gazaffi, Rodrigo MARTINS, ELIANA R. F. DAHMER, NAIR SFORÇA, DANILO A. SILVA, CLAUDIO B. C. BUNDOCK, PETER HENRY, ROBERT J. Souza, Glaucia M. Van Sluys, Marie-Anne LANDELL, MARCOS G. A. CARNEIRO, MONALISA S. VINCENTZ, MICHEL A. G. PINTO, LUCIANA R. VENCOVSKY, ROLAND , et al. ; SNP genotyping allows an in-depth characterisation of the genome of sugarcane and other complex autopolyploids. Scientific Reports, v. 3, p. 3399, 2013.
76. MONTEIRO-VITORELLO, C.B. ; MONTEIRO-VITORELLO, C. B. ; ZERILLO, M. M. ; ZERILLO, M.M. ; VAN SLUYS, M.A. ; VAN SLUYS, M.-A. ; CAMARGO, L. E. A. ; CAMARGO, L.E.A. ; KITAJIMA, J.P. ; KITAJIMA, J. P. . Complete Genome Sequence of Leifsonia xyli subsp. cynodontis Strain DSM46306, a Gram-Positive Bacterial Pathogen of Grasses. Genome Announcements, v. 1, p. e00915-13-e00915-13, 2013.
2012
75. Palhares, Alessandra C ; Marconi, Thiago G ; Mollinari, Marcelo ; Gazaffi, Rodrigo ; Garcia, Antonio Augusto F ; Vieira, Maria Lucia Carneiro ; Rodrigues-Morais, Taislene B ; Jordão, Hamilton ; Van Sluys, Marie-Anne ; Domingues, Douglas S ; Maccheroni, Walter ; Souza, Anete P . A novel linkage map of sugarcane with evidence for clustering of retrotransposon-based markers. BMC Genetics (Online), v. 13, p. 51, 2012.
74. VICENTINI, R. ; NOGUEIRA, F. T. S. ; Vincentz, M. ; BEM, L. E. V. ; SLUYS, M. A. . Gene Content Analysis of Sugarcane Public ESTs Reveals Thousands of Missing Coding-Genes and an Unexpected Pool of Grasses Conserved ncRNAs. Tropical Plant Biology (Online), v. 1, p. 1, 2012.
73. KAJIHARA, D. ; Godoy F ; Hamaji TA ; BLANCO, S. R. ; VANSLUYS, M A ; ROSSI, M. . Functional characterization of sugarcane mustang domesticated transposases and comparative diversity in sugarcane, rice, maize and sorghum. Genetics and Molecular Biology (Impresso), v. 35, p. 632-639, 2012.
72. Varani, Alessandro M. ; MONTEIRO-VITORELLO, CLAUDIA B. ; ALMEIDA, LUIZ G.P. DE ; SOUZA, RANGEL C. ; CUNHA, OBERDAN L. ; Lima, Wanessa C. ; Civerolo, Edwin ; SLUYS, MARIE-ANNE VAN ; VASCONCELOS, ANA T.R. . Xylella fastidiosa comparative genomic database is an information resource to explore the annotation, genomic features, and biology of different strains. Genetics and Molecular Biology (Impresso), v. 35, p. 149-152, 2012.
71. JOLY, C. A. ; BERLINCK, R. G. S. ; BOLZANI, V. S. ; HADDAD, C. F. B. ; OLIVEIRA, M. C. ; SLUYS MAV. ; SOUZA, G. M. ; VERDADE, L. M. ; VICTORIA, R. L. . Principais conclusões do workshop conjunto dos programas FAPESP BIOTA-BIOEN-Mudanças Climáticas: ciência e políticas públicas para uma economia mais verde, no contexto da RIO+20. Biota Neotropica, v. 12(2), p. 19-21, 2012.
70. Domingues, Douglas S ; Cruz, Guilherme MQ ; Metcalfe, Cushla J ; Nogueira, Fabio TS ; Vicentini, Renato ; de S Alves, Cristiane ; Van Sluys, Marie-Anne. Analysis of plant LTR-retrotransposons at the fine-scale family level reveals individual molecular patterns. BMC GENOMICS, v. 13, p. 137, 2012.
69. Manetti, M. E. ; ROSSI, M. ; CRUZ, G. M. Q. ; SACCARO, N. L. ; NAKABASHI, M. ; ALTEBARMAKIAN, V. ; RODIER-GOUD, M. ; DOMINGUES, D. ; D?HONT, A. ; SLUYS, M. A. . Mutator System Derivatives Isolated from Sugarcane Genome Sequence. Tropical Plant Biology, v. 5, p. 233-243, 2012.
68. Jesus, Erika M. ; Ochoa Cruz, Edgar A. ; Cruz, Guilherme M. Q. ; Van Sluys, Marie-Anne . Diversification of hAT transposase paralogues in the sugarcane genome. MOLECULAR GENETICS AND GENOMICS, v. 287, p. 205-219, 2012.
2011
67. Setta, Nathalia ; Sluys, Marie-Anne ; Capy, Pierre ; Carareto, Claudia Marcia Aparecida . Copia Retrotransposon in the Zaprionus Genus: Another Case of Transposable Element Sharing with the Drosophila melanogaster Subgroup. Journal of Molecular Evolution, v. 72, p. 326-338, 2011.
66. Garsmeur, Olivier ; Charron, Carine ; Bocs, Stéphanie ; Jouffe, Vincent ; Samain, Sylvie ; Couloux, Arnaud ; Droc, Gaëtan ; Zini, Cyrille ; Glaszmann, Jean-Christophe ; Van Sluys, Marie-Anne ; D¿Hont, Angélique . High homologous gene conservation despite extreme autopolyploid redundancy in sugarcane. New Phytologist (Print), v. 189, p. 629-642, 2011.
65. Ryan, Robert P. ; Vorhölter, Frank-Jörg ; Potnis, Neha ; Jones, Jeffrey B. ; Van Sluys, Marie-Anne ; Bogdanove, Adam J. ; Dow, J. Maxwell . Pathogenomics of Xanthomonas: understanding bacterium-plant interactions. Nature Review, Microbiology (Print), v. 9, p. 344-355, 2011.
64. Bogdanove, A. J. Koebnik, R. Lu, H. Furutani, A. Angiuoli, S. V. Patil, P. B. Van Sluys, M.-A. Ryan, R. P. Meyer, D. F. Han, S.-W. Aparna, G. Rajaram, M. Delcher, A. L. Phillippy, A. M. Puiu, D. Schatz, M. C. Shumway, M. Sommer, D. D. Trapnell, C. Benahmed, F. Dimitrov, G. Madupu, R. Radune, D. Sullivan, S. Jha, G. , et al. ; Two new complete genome sequences offer insight into host and tissue specificity of plant pathogenic Xanthomonas spp.. Journal of Bacteriology (Print), v. 193, p. 5450-5464, 2011.
63. SOUZA, GLAUCIA MENDES ; BERGES, HELENE ; BOCS, STEPHANIE ; CASU, ROSANNE ; D’HONT, ANGELIQUE ; FERREIRA, JOÃO EDUARDO ; HENRY, ROBERT ; Ming, Ray ; POTIER, BERNARD ; Sluys, Marie-Anne ; VINCENTZ, Michel ; PATERSON, ANDREW H. . The Sugarcane Genome Challenge: Strategies for Sequencing a Highly Complex Genome. Tropical Plant Biology (Online), v. 4, p. 145-156, 2011.
2010
62. Freschi, L. ; Rodrigues, M. A. ; Domingues, D. S. ; Purgatto, E. ; Van Sluys, M. A. ; Magalhaes, J. R. ; Kaiser, W. M. ; Mercier, H. . Nitric Oxide Mediates the Hormonal Control of Crassulacean Acid Metabolism Expression in Young Pineapple Plants. Plant Physiology (Bethesda), v. 152, p. 1971-1985, 2010.
61. Kamenetzky, L. ; Asis, R. ; Bassi, S. ; de Godoy, F. ; Bermudez, L. ; Fernie, A. R. ; Van Sluys, M. A. ; Vrebalov, J. ; Giovannoni, J. J. ; ROSSI, M. ; Carrari, F. . Genomic Analysis of Wild Tomato Introgressions Determining Metabolism- and Yield-Associated Traits. Plant Physiology (Bethesda), v. 152, p. 1772-1786, 2010.
60. Wang, Jianping ; Roe, Bruce ; Macmil, Simone ; Yu, Qingyi ; Murray, Jan ; Tang, Haibao ; Chen, Cuixia ; Najar, Fares ; Wiley, Graham ; Bowers, John ; Van Sluys, Marie-Anne ; Rokhsar, Daniel S ; Hudson, Matthew E ; Moose, Stephen P ; Paterson, Andrew H ; Ming, Ray . Microcollinearity between autopolyploid sugarcane and diploid sorghum genomes. BMC Genomics, v. 11, p. 261, 2010.
59. Lang, Jillian M. ; Hamilton, John P. ; Diaz, Maria Genaleen Q. ; Van Sluys, Marie Anne ; Burgos, Ma. Ruby G. ; Vera Cruz, Casiana M. ; Buell, C. Robin ; Tisserat, Ned A. ; Leach, Jan E. . Genomics-Based Diagnostic Marker Development for pv. and pv.. Plant Disease, v. 94, p. 311-319, 2010.
58. Souza, Beatriz M. ; Molfetta-Machado, Jeanne B. ; Freschi, Luciano ; Figueira, Antonio ; Purgatto, Eduardo ; Buckeridge, Marcos S. ; Sluys, Marie-Anne ; Mercier, Helenice . Axillary bud development in pineapple nodal segments correlates with changes on cell cycle gene expression, hormone level, and sucrose and glutamate contents. In Vitro Cellular & Developmental Biology. Plant, v. 46, p. 281-288, 2010.
57. Hotta, Carlos T. ; Souza, Amanda P. ; Margarido, Gabriel R. A. ; Sluys, Marie-Anne ; GARCIA, ANTôNIO A. F. ; Domingues, Douglas S. ; Mollinari, Marcelo ; Ochoa, Edgar A. ; Carrer, Helaine ; Melotto-Passarin, Danila M. ; Hoshino, Andrea A. ; Souza, Glaucia M. ; Santos, Melissa O. ; Menossi, Marcelo ; Souza, Anete P. ; Santos, Wanderley D. ; Marconi, Thiago G. ; CRIVELLARI, AUGUSTO CéSAR ; Buckeridge, Marcos S. ; Cruz, Guilherme M. Q. ; Lembke, Carolina G. . The Biotechnology Roadmap for Sugarcane Improvement. Tropical Plant Biology (Online), v. 3, p. 75-87, 2010.
2009
56. Manetti, M. E. ; ROSSI, M. ; NAKABASHI, M. ; GRANDBASTIEN, M. A. ; Sluys, Marie Anne . The Tnt1 family member Retrosol copy number and structure disclose retrotransposon diversification in different Solanum species. Molecular Genetics and Genomics, v. 281, p. 261-271, 2009.
55. de Setta, Nathalia ; Van Sluys, Marie-Anne ; Capy, Pierre ; Carareto, Claudia MA . Multiple invasions of Gypsy and Micropia retroelements in genus Zaprionus and melanogaster subgroup of the genus Drosophila. BMC Evolutionary Biology (Online), v. 9, p. 279, 2009.
54. Freschi, Luciano ; Nievola, Catarina Carvalho ; Rodrigues, Maria Aurineide ; DOMINGUES, Douglas Silva ; Van Sluys, Marie-Anne ; Mercier, Helenice . Thermoperiod affects the diurnal cycle of nitrate reductase expression and activity in pineapple plants by modulating the endogenous levels of cytokinins. Physiologia plantarum (Kobenhavn. 1948), v. 137, p. 201-212, 2009.
2008
53. LIMA, W. ; PAQUOLA, A. C. ; VARANI, A. M. ; VANSLUYS MA ; MENCK, C. F. M. . Laterally transferred genomic islands in Xanthomonadales related to pathogenicity and primary metabolism.. FEMS Microbiology Letters, v. 281, p. 87-97, 2008.
52. Zerillo, Marcelo M ; VAN SLUYS, M A ; Camargo, Luis ; Monteiro-Vitorello, Claudia B . Characterization of new IS elements and studies of their dispersion in two subspecies of Leifsonia xyli. BMC Microbiology (Online), v. 8, p. 127, 2008.
51. Bermudez, L. ; Urias, U. ; Milstein, D. ; Kamenetzky, L. ; Asis, R. ; Fernie, A. R. ; VAN SLUYS, M A ; Carrari, F. ; ROSSI, M. . A candidate gene survey of quantitative trait loci affecting chemical composition in tomato fruit. Journal of Experimental Botany, v. 59, p. 2875-2890, 2008.
50. MENOSSI, M. ; SILVA-FILHO, M. C. ; Vincentz, M. ; Van-Sluys, M.-A. ; Souza, G. M. . Sugarcane Functional Genomics: Gene Discovery for Agronomic Trait Development, v. 2008, p. 1-12, 2008.
49. Salzberg, Steven L Sommer, Daniel D Schatz, Michael C Phillippy, Adam M Rabinowicz, Pablo D Tsuge, Seiji Furutani, Ayako Ochiai, Hirokazu Delcher, Arthur L Kelley, David Madupu, Ramana Puiu, Daniela Radune, Diana Shumway, Martin Trapnell, Cole Aparna, Gudlur Jha, Gopaljee Pandey, Alok Patil, Prabhu B Ishihara, Hiromichi Meyer, Damien F Szurek, Boris Verdier, Valerie Koebnik, Ralf Dow, J Maxwell , et al. ; Genome sequence and rapid evolution of the rice pathogen Xanthomonas oryzae pv. oryzae PXO99A. BMC Genomics, v. 9, p. 204, 2008.
48. de Mello Varani, Alessandro ; Souza, Rangel Celso ; Nakaya, Helder I. ; de Lima, Wanessa Cristina ; Paula de Almeida, Luiz Gonzaga ; Kitajima, Elliot Watanabe ; Chen, Jianchi ; Civerolo, Edwin ; Vasconcelos, Ana Tereza Ribeiro ; Van Sluys, Marie-Anne . Origins of the Xylella fastidiosa Prophage-Like Regions and Their Impact in Genome Differentiation, v. 3, p. e4059, 2008.
47. Lu, Hong ; Patil, Prabhu ; Van Sluys, Marie-Anne ; White, Frank F. ; Ryan, Robert P. ; Dow, J. Maxwell ; Rabinowicz, Pablo ; Salzberg, Steven L. ; Leach, Jan E. ; Sonti, Ramesh ; Brendel, Volker ; Bogdanove, Adam J. . Acquisition and Evolution of Plant Pathogenesis-Associated Gene Clusters and Candidate Determinants of Tissue-Specificity in Xanthomonas, v. 3, p. e3828, 2008.
2007
46. SETTA, N. ; COSTA, A. P. P. ; Lopes FR ; SLUYS MAV. ; CARARETO, C. M. . Transposon Display supports transpositional activity of P element in species of the saltans group of Drosophila. Journal of Genetics, v. 86, p. 37-43, 2007.
45. MANETTI, Maria Elisa ; ROSSI, M. ; COSTA, A. P. P. ; Clausen AM ; SLUYS MAV. . Radiation of the Tnt1 retrotransposon superfamily in three Solanaceae genera.. BMC Evolutionary Biology (Online), v. 7, p. 34, 2007.
44. Gonçalves EG ; Mayo SJ ; SLUYS MAV. ; Salatino A . Combined genotypic-phenotypic phylogeny of the tribe Spathicarpeae (Araceae) with reference to independent events of invasion to Andean regions.. Molecular Phylogenetics and Evolution, v. jan, p. in press, 2007.
2006
43. MARQUES, D. A. ; FOGLIO, M. A. ; MORGANTE, P. G. ; SLUYS MAV. ; SHEPHERD, S. L. K. . Biotechnology approaches for production of antiulcerogenic dihydro-epideoxyarteannin B isolated from Artemisia annua L.. Revista Brasileira de Farmacognosia, v. 16, p. 291-299, 2006.
42. GODOI, P. ; GALHARDO, R. ; LUCHE, D. D. ; SLUYS MAV. ; MENCK, C. F. M. ; OLIVA, G. . Structure of the Thiazole Biosynthetic Enzyme THI1 from Arabidopsis thaliana. The Journal of Biological Chemistry, v. 281, p. online, 2006.
41. SACCARO-JUNIOR, N. L. ; SLUYS MAV. ; VARANI, A. M. ; ROSSI, M. . MudrA-like sequences from rice and sugarcane cluster as two bona fide transposon clades and two domesticated transposases.. Gene (Amsterdam), v. 6, p. in press, 2006.
40. Reis LF ; SLUYS MAV. ; Garrat RC ; Pereira HM ; Teixeira MM . GMOs: building the future on the basis of past experience. Anais da Academia Brasileira de Ciências, v. 78, p. 667-686, 2006.
39. PACHECO, F. H. T. ; SILVA-STENICO, M. E. ; SILVA, D. M. ; Van Sluys, M. A. . Characterization of Agrobacterium tumefaciens Strains Isolated from Brazilian Plant Species. American Journal of Plant Physiology, v. 2, p. 142-150, 2006.
2005
38. GRANDBASTIEN, M. A. ; AUDEON, C. ; BONNIVARD, E. ; CASACUCERTA, J. M. ; CHALHOUB, B. ; COSTA, A. P. P. ; et al ; SLUYS MAV. ; MIHRI, C. . Stress Activation And Genomic Impact Of Tnt1 Retrotransposons In Solanaceae. Cytogenetic and Genome Research, v. 110, n.1-4, p. 229-241, 2005.
37. MORGANTE, P. G. ; BERRA, C. ; NAKABASHI, M. ; COSTA, R. ; MENCK, C. F. M. ; SLUYS MAV. . Functional XPB/RAD25 redundancy in Arabidopsis genome: characterization of AtXPB2 and expression analysis. Gene (Amsterdam), Holanda, v. 344, p. 93-103, 2005.
36. CHEN, J. ; CIVEROLO, E. L. ; SLUYS MAV. ; OLIVEIRA, M. C. . Genetic Discovery in Xylella fastidiosa Through Sequence Analysis of Selected Randomly Amplified Polymorphic DNAs. Current Microbiology, v. 50, n.2, p. 78-83, 2005.
35. RIBEIRO, D. ; FARIAS, L. P. ; ALMEIDA, J. D. ; KASHIWABARA, P. M. ; RIBEIRO, A. F. C. ; SILVA FILHO, M. C. ; MENCK, C. F. M. ; SLUYS MAV. . Functional characterization of the thi1 promoter region from Arabidopsis thaliana. Journal of Experimental Botany, v. 56, n.417, p. 1797-1804, 2005.
34. MONTEIROVITORELLO, C B ; OLIVEIRA, Mariana Cabral de ; ZERILLO, M. M. ; VARANI, A. M. ; CIVEROLO, E. L. ; SLUYS MAV. . Xylella and Xanthomonas mobil`omics. Journal of Integrative Biology / Omics (Larchmont), v. 9, n.2, p. 146-159, 2005.
33. LIMA, W. ; SLUYS MAV. ; MENCK, C. F. M. . Non-gamma-proteobacteria gene islands contribute to the Xanthomonas genome. Journal of Integrative Biology / Omics (Larchmont), v. 9, n.2, p. 160-172, 2005.
32. ARAÚJO, P. G. ; ROSSI, M. ; JESUS, Erika Maria de ; SACCARO-JUNIOR, N. L. ; KAJIHARA, D. ; et al ; CHABREGAS, S. M. ; ULIAN, E. C. ; MENOSSI, M. ; SLUYS MAV. . Transcriptionally active transposable elements in recent hybrid sugarcane. Plant Journal, v. 44, n.5, p. 707-717, 2005.
2004
31. NASCIMENTO, Ana Lúcia ; VERJOSKI-ALMEIDA, Sergio ; SLUYS MAV. ; MONTEIROVITORELLO, C B ; CAMARGO, L E A ; DIGIAMPIETRI, La ; HARSTKEERL, Rudy A ; HO, Pl ; MARQUES, Marilis V ; OLIVEIRA, Mariana Cabral de ; SETUBAL, João Carlos ; HAAKE, David A ; MARTINS, Elizabeth A . Genome features of Leptospira interrogans serovar Copenhageni. Brazilian Journal of Medical and Biological Research, v. 37, n.4, p. 459-477, 2004.
30. NASCIMENTO, Ana Lúcia ; KO, Albert ; MARTINS, Elizabeth A ; MONTEIROVITORELLO, C B ; HO, P L ; et al ; SLUYS MAV. . Comparative genomics of two Leptospira interrogans serovars reveals novel insights into physiology and pathogenesis. Journal of Bacteriology, v. 186, n.7, p. 2164-2172, 2004.
29. VINCENTZ, Michel ; CARA, F A ; OKURA, V K ; SILVA, F R da ; et al ; SLUYS MAV. ; NOBREGA, Francisco Gorgonio da ; ARRUDA, Paulo ; MENCK, Carlos Frederico Martins . Evaluation of monocot and eudicot divergence using the sugarcane transcriptome. Plant Physiology (Bethesda), v. 134, n.3, p. 951-959, 2004.
28. ROSSI, M. ; ARAÚJO, P. G. ; JESUS, Erika Maria de ; VARANI, A. M. ; SLUYS MAV. . Comparative analysis of sugarcane Mutator-like transposases. Molecular Genetics and Genomics, v. 272, p. 194-203, 2004.
27. MONTEIROVITORELLO, C B ; CAMARGO, L E A ; SLUYS MAV. ; KITAJIMA, J. P. ; TRUFFI, D. ; AMARAL, A. M. ; et al ; SETUBAL, J. C. . The genome sequence of the gram-positive sugarcane pathogen Leifsonia xyli subsp. xyli. Molecular Plant-Microbe Interactions, v. 17, n.8, p. 827-836, 2004.
2003
26. SLUYS MAV.; OLIVEIRA, Mariana Cabral de MONTEIROVITORELLO, C B MIYAKI, C. Y. FURLAN, L. R. CAMARGO, L E A SILVA, A. C. R. MOON, D. H. TAKITA, M. A. LEMOS, E. G. M. MACHADO, M. A. FERRO, M. I. T. SILVA, F R da GOLDMAN, M. H. S. GOLDMAN, G. H. LEMOS, M. V. F. DORRY, H. E. TSAI, S. M. CARRER, H. CARRARO, D. M. OLIVEIRA, R. C. NUNES, L. R. SIQUEIRA, W. J. COUTINHO, L. L. KIMURA, E. T. , et al. ; Comparative Analyses of the Complete Genome Sequences of Pierce’s Disease and Citrus Variegated Chlorosis Strains of Xylella fastidiosa. Journal of Bacteriology, v. 185, p. 1018-1026, 2003.
25. CHABREGAS, S. M. ; LUCHE, D. D. ; MENCK, Carlos Frederico Martins ; SLUYS MAV. ; SILVA FILHO, M. C. . Differential usage of two-frame translational start codons regulates subcellular localization of Arabidopsis thaliana THI 1. Journal of Cell Science, v. 116, p. 285-291, 2003.
24. PAPINITERZI, F. S. ; GALHARDO, R. ; FARIAS, L. P. ; MENCK, C. F. M. ; SLUYS MAV. . Point Mutation is Responsible for Arabidopsis tz-201 Mutant Phenotype Affecting Thiamin Biosynthesis. Plant and Cell Physiology, v. 44, n.8, p. 865-860, 2003.
23. ROSSI, M. ; ARAÚJO, P. G. ; PAULET, F. ; GARSMEUR, O. ; VM Dias ; CHEN, H. ; SLUYS MAV. ; DHONT, A. . Genomic distribution and characterization of EST-derived resistance gene analogs (RGAs) in sugarcane. Molecular Genetics and Genomics, v. 269, n.3, p. 406-419, 2003.
22. VETTORE, Andre L ; SILVA, Felipe R da ; KEMPER, Edson ; SOUZA, Glaucia M ; SILVA, Aline M da ; et al ; SLUYS MAV. ; ETAL . Analysis and functional annotation of an expressed sequence tag collection for tropical crop sugarcane. Genome Research, v. 13, n.12, p. 2725-2735, 2003.
2002
21. SLUYS MAV.; VITORELLO, C. B. M. ; CAMARGO, L E A ; MENCK, Carlos Frederico Martins ; SILVA, A. C. R. ; FERRO, J. A. ; OLIVEIRA, Mariana Cabral de ; SETUBAL, J. C. ; KITAJIMA, J. P. ; SIMPSON, A. J. . Comparative genomic analysis of plant-associated bacteria. Annual Review of Phytopathology (Print), Estados Unidos, v. 40, p. 169-189, 2002.
20. SILVA, A. C. ; FERRO, J. A. ; REINACH, F. C. ; FARAH, C. S. ; FURLAN, L. R. ; QUAGGIO, R. B. ; VILTORELLO, C. B. M. ; SLUYS MAV. ; et al . Comparison of the genomes of two Xanthomonas pathogens with differing host specificities. Nature (London), Estados Unidos, v. 417, p. 459-453, 2002.
2001
19. ARAÚJO, P. G. ; CASACUCERTA, J. M. ; COSTA, A. P. P. ; HASHIMOTO, R. Y. ; GRANDBASTIEN, M. A. ; SLUYS MAV. . Retrolyc1 subfamilies defined by different U3 LTR regulatory regions in the Lycopersicon genus. Molecular and General Genetics, v. 266, n.1, p. 35-41, 2001.
18. CHABREGAS, S. M. ; LUCHE, D. D. ; FARIAS, L. P. ; RIBEIRO, A. F. ; SLUYS MAV. ; MENCK, C. F. M. ; SILVA-FILHO, M. C. . Dual targetting properties of the N-terminal signal sequence of Arabidopsis thaliana THI1 protein to mitochondria and chloroplast. Plant Molecular Biology, v. 46, p. 639-650, 2001.
17. MORGANTE, P. G. ; PERES, L. E. P. ; VECHI, C. ; KRAUS, J. ; SLUYS MAV. . Shoot regeneration capacity from roots and transgenic hairy roots of different tomato cultivars and wild related species. Plant Cell, Tissue and Organ Culture, v. 65, p. 37-44, 2001.
16. SALTINO, A. ; SALATINO, M. L. F. ; MELLOSILVA, R. ; SLUYS MAV. ; GIANNASI, D ; PRICE, R.A . Phylogenetic inference in Velloziaceae using chloroplast trnL-F sequences Systematic Botany, v. 26, p. 92-103, 2001.
15. COSTA, R. ; MORGANTE, P. ; BERRA, C. ; NAKABASHI, M. ; BRUNEAU, D. ; BOUCHEZ, D. ; SWEDER, K. ; SLUYS MAV. ; MENCK, C. F. M. . The participation of AtXPB1, the XPB/RAD25 homologue gene from Arabidopsis thaliana, in DNA repair and plant development. Plant Journal, v. 28, p. 385-395, 2001.
14. ROSSI, M. ; ARAÚJO, P. G. ; SLUYS MAV. . Survey of transposable elements in sugarcane expressed sequence tags (ESTs). Genetics and Molecular Biology, Estados Unidos, v. 24, p. 147-154, 2001.
2000
13. SIMPSON, A. J. G. ; GRUPOONSAFAPESP, N. ; SLUYS MAV. ; ET, Al ; SETUBAL, J. C. . The genome sequence of the plant pathogen Xylella fastidiosa. Nature (London), v. 406, p. 151-157, 2000.
1999
12. SCORTECCI, K. C. ; RAINA, R. ; FEDOROFF, N. V. ; SLUYS MAV. . Negative effect of the 5’untranslated leader sequence on the Ac transpososn promoter expression. Plant Molecular Biology, Estados Unidos, v. 40, p. 935-944, 1999.
11. HASHIMOTO, R. Y. ; MENCK, C. F. M. ; SLUYS MAV. . Negative selection driven by the cytosine deaminase gene in Lycopersicon esculentum hairy roots. Plant Science (Limerick), v. 141, n.2, p. 175-181, 1999.
10. COSTA, A. P. P. ; ARAÚJO, P. G. ; HASHIMOTO, R. Y. ; CASACUCERTA, J. M. ; GRANDBASTIEN, M. A. ; SLUYS MAV. . Retrolyc1-1, a member of the Tnt1 retrotransposon super-family in the Lycopersicon peruvianum genome. Genetica (The Hague), Estados Unidos, v. 107, p. 65-72, 1999.
1998
9. RIBEIRO, D. ; SLUYS MAV. ; MACHADO, C. R. ; COSTA, R. ; PRAEKELT, U. ; MENCK, C. F. M. . Cloning Of A cDNA Of Arabidopsis thaliana Homologous To The Human Xpb Gene. Gene (Amsterdam), Estados Unidos, v. 208, p. 207-213, 1998.
1997
8. SCORTECCI, K. C. ; DESSAUX, Y. ; PETIT, A. ; VAN SLUYS, M A . Somatic Excision Of The Ac Transposable Element In Transgenic Arabidopsis Thaliana After 5-Azacytidine Treatment. Plant and Cell Physiology, v. 38, p. 336-343, 1997.
1993
7. SLUYS MAV.; VAN-SLUYS, M. A. ; HASHIMOTO, R. Y. ; SCORTECCI, K. C. . Gene Transfer From Agrobacterium To Plants.. Ciência e Cultura (SBPC), v. 44, n.5, p. 0-0, 1993.
6. SLUYS MAV.; SCORTECCI, J. ; TEMPE, J. . DNA Methylation Associated To Ac Element In Arabidopsis. Plant Physiology and Biochemistry (Paris), Europa, v. 31, n.6, p. 805-813, 1993.
1989
5. SLUYS MAV.; TEMPE, J. . Behavior Of The Maize Transposable Element Activator In Daucus Carota. Molecular and General Genetics, v. 219, p. 313-319, 1989.
1987
4. SLUYS MAV.; CARDARELLI, M. ; SPANO, L. ; MAURO, M. L. ; TEMPE, J. . The Role Of Auxin In Hairy Root Induction. Molecular and General Genetics, v. 208, p. 457-463, 1987.
3. SLUYS MAV.; TEMPE, J. ; FEDOROFF, N. V. . Studies On The Introduction And Mobility Of The Maize Activator Element In Arabidopsis Thaliana And Daucus Carota. EMBO Journal, Europa, v. 6, p. 3881-3889, 1987.
1986
2. SLUYS MAV.; OLIVEIRA, R. C. ; FENSELWALB, I. ; GOMES, R. A. ; MENCK, Carlos Frederico Martins . Ascorbate-Copper Induce Dna Lesions And Repair In Escherichia Coli K12cells. Carcinogenesis (New York), v. 7, p. 197-200, 1986.
1. SLUYS MAV.; OLIVEIRA, R. C. ; MENCK, C. F. M. ; GOMES, R. A. . Escherichia Coli Xth A Mutant Is Not Hypersensitive To Ascorbic Acid- Cooper Treatment: An H2O2 Reaction. Mutation Research, v. 174, p. 265-269, 1986.
